Epigenetic modification | Method | Reference(s) |
---|---|---|
DNA methylation | MethylC-seq | [40] |
 | BS-seq | [31] |
 | MeDIP-seq | [33] |
 | MRE-seq | [37] |
 | MethylCap-seq | [30] |
 | RRBS | [41] |
Histone post-translational modifications | ChIP-seq | |
Histone variants | ChIP-seq | [36] |
Chromatin modifiers and remodelers | ChIP-seq | |
Chromatin accessibility | DNAseI-seq | [29] |
 | FAIRE-seq | [35] |
 | Sono-seq | [28] |
Nucleosome positioning and turnover | MNase-seq | [44] |
 | CATCH-IT | [32] |
Long-range chromatin interactions | Hi-C | [39] |
 | ChIA-PET | [34] |
Allele-specific chromatin signatures | haploChIP |