| ANNOVAR | TREAT | VAAST | VarSifter | Var-MD | KGGSeq | SVA | Anntools | VarioWatch | SeqAnt | Annotate-it |
---|---|---|---|---|---|---|---|---|---|---|---|
Interface | Command line | Command line | Command line | Graphical | Python script | Command line | Graphical | Command line | Web | Web | Web |
Indels | x | x | x | x | Â | x | x | x | Â | x | Â |
SNPs | x | x | x | x | x | x | x | x | x | x | x |
miRNA annotation | x | Â | Â | Â | Â | Â | Â | x | Â | Â | x |
Regulatory region annotation | x | x | Â | Â | Â | x | Â | x | Â | Â | Â |
Custom annotation | x | Â | Â | Â | Â | Â | x | x | Â | Â | Â |
Gene annotation | x | x | Â | Â | Â | x | x | x | x | x | x |
Conservation scores | x | x | Â | Â | Â | x | Â | Â | Â | x | x |
LRT | x | Â | Â | Â | Â | x | Â | Â | Â | Â | x |
MutationTaster | x | Â | Â | Â | Â | x | Â | Â | Â | Â | x |
Polyphen2 | x | x | Â | Â | Â | x | Â | Â | Â | Â | x |
SIFT | x | x | Â | Â | Â | x | Â | Â | x | Â | x |
Aggregate scores | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | x |
Haploinsufficiency prediction | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x |
OMIM | Â | x | Â | Â | Â | Â | x | Â | x | Â | x |
NHLBI Exomes | x | Â | Â | Â | Â | Â | Â | Â | Â | Â | x |
200 Danish Exomes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x |
1000 Genomes | x | x | Â | Â | Â | x | x | x | x | x | x |
dbSNP | x | x | Â | Â | Â | x | x | x | x | x | x |
Gene prioritization | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x |
Literature retrieval | Â | Â | Â | Â | Â | x | Â | Â | x | Â | x |
Gene ontology | Â | Â | Â | Â | Â | Â | x | Â | x | Â | x |
PPI/complexes | Â | Â | Â | Â | Â | x | Â | Â | Â | Â | x |
Pathway information | Â | x | Â | Â | Â | x | x | Â | x | Â | x |
Gene expression | Â | x | Â | Â | Â | Â | Â | Â | Â | Â | x |
Statistical analysis | Â | Â | x | Â | Â | Â | x | Â | Â | Â | x |
Filter | x | x | Â | x | x | x | x | Â | Â | Â | x |
Complex filtering rules | Â | Â | Â | x | Â | x | x | Â | Â | Â | x |
Cross-sample querying | Â | Â | Â | x | x | x | x | Â | Â | Â | x |
Genetic inheritance models | Â | Â | x | x | x | x | x | Â | Â | x | x |
Data sharing | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | x |
Visualizations | Â | x | Â | Â | Â | Â | x | Â | x | x | x |