Search purpose | Search terms | Inclusion criteria | Exclusion criteria |
---|---|---|---|
Identify studies of Pathogen Biology using whole genome sequencing and analysis | `genome sequencing AND `tuberculosis AND (`drug resistance OR `virulence OR `immunogenicity OR `transmissibility OR `fitness) | All abstracts describing the use of WGS data to identify genes related to pathogen immunogenicity, virulence, transmissibility, drug resistance, or fitness | (1) Review articles |
(2) Studies that published new sequence data only | |||
(3) Studies that did not study MTB bacteria and its biology | |||
In all PubMed fields | |||
(4) Studies that only assess mutation rates in non-clinical settings |