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Table 3 HLA long haplotypes observed in our data and their population distribution records in a public database

From: HLAreporter: a tool for HLA typing from next generation sequencing data

Haplotype HLA A-B-C-DRB1-DQB1

Frequency (%)

Population in DB a

DB frequency (%)

A*33:03-B*58:01-C*03:02-DRB1*03:01-DQB1*02:01

3.36

USA Asian; V; SK; G

2.21; 3.50; 1.90; 0.25

A*02:07-B*46:01-C*01:02-DRB1*14:01-DQB1*05:02

1.34

USA Asianb

0.13

A*02:07-B*46:01-C*01:02-DRB1*04:05-DQB1*04:01

1.01

USA Asian

0.11

A*02:07-B*46:01-C*01:02-DRB1*09:01-DQB1*03:03

1.68

USA Asian

1.54; 2.00

A*11:01-B*13:01-C*03:04-DRB1*16:02-DQB1*05:02

0.67

USA Asian; Hispanic

0.18; 0.05

A*11:01-B*15:02-C*08:01-DRB1*15:01-DQB1*06:01

1.68

USA Asian

0.31

A*11:01-B*15:02-C*08:01-DRB1*12:02-DQB1*03:01

3.02

USA Asian; Yunnanc

1.41; 1.70-3.40

  1. aFull names of the populations in the database are USA Asian pop 2 (USA Asian), Vietnam Hanoi Kinh pop 2 (V), South Korea pop 3 (SK), Germany DKMS-Turkey minority (G), USA Hispanic pop 2 (Hispanic), China Yunan (Yunan). bThis population has a relatively large sample size of 1,772 in the database. cSeveral populations in this Yunnan group with small sample size are not shown.
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Genome Medicine

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