Table 4 List of MAPs selected for ex vivo immunoassay. Annotated list of 20 peptides identified in Mlh1-/- cells
Peptides | Genomic coordinates of pep seq | Region | #Reads | Alterations | Canonical | %AF | MS replicates | MS intensity | Gene FPKM | Pool |
|---|---|---|---|---|---|---|---|---|---|---|
NKKNEGWLSKP | chr19:40559969-40560003 | intron | 10 | WT | Non-canonical | 100 | 1 | NA | 50.32 | 1 |
EMKPFIPI | chrX:104994035-104994060 | extragenic | 10 | WT | Non-canonical | 100 | 1 | 11750000 | NA | 1 |
FRGLTETTSSL | chr8:34821561-34821595 | extragenic | 12 | WT | Non-canonical | 100 | 1 | NA | NA | 1 |
FLRRCCLARYE | chrX:142351611-142351618 chrX:142390305-142390331 | utr5 | 10 | WT | Non-canonical | 100 | 1 | NA | 26.06 | 1 |
LKIAWLREICL | chr9:14546274-14546308 | utr3 | 16 | SNV | Non-canonical | 15.9574 | 1 | NA | 23.57 | 1 |
YRRFSFEG | chr7:118853174-118853202 | cds | 12 | SNV | Non-canonical | 14.4144 | 2 | 15288667 | 14.72 | 2 |
VKMPDAPR | chr12:105662622-105662648 | cds | 11 | SNV | Non-canonical | 18.5185 | 1 | 16421000 | 5.59 | 2 |
CASARCSPCLT | chr2:34870760-34870794 | cds | 15 | SNV | Non-canonical | 12.973 | 1 | NA | 39.25 | 2 |
AEKLKRAAEKD | chrX:136085159-136085193 | utr5 | 12 | WT | Non-canonical | 100 | 1 | NA | 5.46 | 2 |
HKKPQPVPRAH | chr6:120482825-120482859 | utr3 | 15 | SNV | Non-canonical | 15.8273 | 1 | NA | 9.42 | 2 |
RQWERTVKNKQ | chr5:67621541-67621575 | utr3 | 11 | WT | Non-canonical | 100 | 1 | NA | 1.47 | 2 |
ELRLRHIAWAL | chr11:96712585-96712619 | intron | 14 | WT | Non-canonical | 100 | 1 | NA | 0.82 | 2 |
ITINPIKSMLF | chr16:30341231-30341265 | cds | 17 | WT | Non-canonical | 100 | 1 | NA | 43.64 | 3 |
IFPSIGDLALS | chr14:101918019-101918044 chr14:101918612-101918620 | cds | 14 | WT | Non-canonical | 100 | 1 | NA | 78.13 | 3 |
PSAFILIRKLG | chr7:45013466-45013500 | cds | 12 | SNV | Non-canonical | 16.7883 | 1 | NA | 38.55 | 3 |
PVVCKSQLAHG | chr1:164050176-164050187 chr1:164050644-164050666 | cds | 21 | WT | Non-canonical | 100 | 1 | NA | 20.21 | 3 |
VLVMFLLGKLP | chr4:82804025-82804058 | utr3 | 18 | WT | Non-canonical | 100 | 1 | NA | 17.02 | 3 |
EPHSVTELKLE | chrX:136079187-136079221 | intron | 11 | WT | Non-canonical | 100 | 1 | NA | 5.46 | 3 |
SAVWTDLKMTP | chr1:153453947-153453981 | extragenic | 10 | WT | Non-canonical | 100 | 1 | NA | NA | 3 |
KCFSVISLYFE | chr5:67732187-67732221 | cds | 10 | WT | Non-canonical | 100 | 1 | NA | 1.47 | 3 |