SRT-Server: powering the analysis of spatial transcriptomic data

Table 1 Summary of the analytic tools for SRT data analysis^a

	SRT-Server	Giotto	Squidpy	Seurat	SPATA2	10 × Platform	spatialGE	Spaniel	STellaris
Implemented language	R + python	R	python	R	R		R	R	R + python
Generic SRT format	Yes	Yes	Yes	Yes	Yes	No	Yes	Yes	Yes
Specific SRT format	Yes	Yes	Yes	Yes	Yes	Yes	No	No	No
Interactive operation	Yes	No	No	No	Yes	Yes	No	No	No
Platform specificity	Yes	No	No	No	No	Yes	No	No	No
Visualization	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Yes
Analytic modules	Yes
QC	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Yes
SVG	Yes	Yes	Yes	No	Yes	Yes	No	No	No
DECON	Yes	Yes	No	No	Yes	Yes	Yes	No	Yes
Clustering	Yes	Yes	Yes	Yes	Yes	Yes	Yes	Yes	No
CCC	Yes	Yes	Yes	No	No	No	No	No	No
DE	Yes	Yes	No	Yes	Yes	Yes	No	No	No
TRAJ	Yes	No	No	No	Yes	No	No	No	No
ORA	Yes	No	No	No	No	No	No	No	No
Reference	N/A	[13]	[11]	[30]	[14]	N/A	[15]	[16]	[17]

ISSN: 1756-994X