From: Identifying latent genetic interactions in genome-wide association studies using multiple traits
Chr. | Gene | Lead SNP | MAF | p-value (aLIT) | p-value (SQ/CP) | p-value (LD) | p-value (Dom.) |
---|---|---|---|---|---|---|---|
16 | FTO | rs11642015 | 0.402 | \(1.08\times 10^{-46}\) | \(2.73\times 10^{-40}\) | \(1.23\times 10^{-46}\) | \(1.28\times 10^{-46}\) |
2 | COBLL1 | rs5835988 | 0.406 | \(5.30\times 10^{-14}\) | \(1.08\times 10^{-9}\) | \(1.29\times 10^{-13}\) | \(5.32\times 10^{-14}\) |
1 | LYPLAL1 | rs2820444 | 0.299 | \(1.17\times 10^{-13}\) | \(2.64\times 10^{-13}\) | \(1.27\times 10^{-13}\) | \(1.19\times 10 ^{-13}\) |
6 | PRSS16 | rs13212921 | 0.136 | \(1.78\times 10^{-13}\) | \(3.40\times 10^{-12}\) | \(1.90\times 10^{-12}\) | \(4.85\times 10^{-9}\) |
18 | MC4R | rs35614134 | 0.234 | \(3.95\times 10^{-12}\) | \(9.34\times 10^{-12}\) | \(1.39\times 10^{-11}\) | \(3.97\times 10^{-12}\) |
1 | ATP2B4 | rs2821230 | 0.474 | \(9.45\times 10^{-11}\) | \(1.19\times 10^{-5}\) | \(1.02\times 10^{-10}\) | \(9.38\times 10 ^{-11}\) |
7 | KLF14 | rs972284 | 0.389 | \(1.43 \times 10^{-10}\) | \(2.43\times 10^{-9}\) | \(1.25\times 10^{-10}\) | \(1.43\times 10^{-10}\) |
11 | LIN7C | rs11030066 | 0.143 | \(6.38 \times 10^{-10}\) | \(5.03\times 10^{-6}\) | \(6.97\times 10^{-10}\) | \(6.62\times 10^{-10}\) |
6 | ILRUN | rs9469860 | 0.146 | \(1.01\times 10^{-9}\) | \(4.47\times 10^{-9}\) | \(7.72\times 10^{-9}\) | \(3.62\times 10^{-7}\) |
12 | FAIM2 | rs7132908 | 0.384 | \(8.85\times 10^{-9}\) | \(4.22\times 10^{-9}\) | \(8.49\times 10^{-9}\) | \(8.96\times 10^{-9}\) |
5 | MAP3K1 | rs157845 | 0.253 | \(1.03\times 10^{-8}\) | \(2.39\times 10^{-4}\) | \(1.30\times 10^{-8}\) | \(1.03\times 10^{-8}\) |