Skip to main content

Table 1 Sequencing and mapping numbers for cell lines out of 3,249,760 total reads

From: Detection of DNA fusion junctions for BCR-ABL translocations by Anchored ChromPET

 

Cell line

 

K562

KU812

Barcoded reads

161,365

1,468,876

Mapped

  

   First tag

24,385

243,684

   Second tag

25,310

246,861

Percent mapped

  

   First tag

15%

17%

   Second tag

16%

17%

Mapped uniquely

  

   First tag

12,800

125,795

   Second tag

13,321

122,665

Total anchored chromPETs

2,839

21,798

Junctional chromPETs

131

427

Percent breakpoint

4.6%

2.0%

  1. The number of chromPETs sequenced, mapped, anchored to BCR and that were junctional for each cell line.
Back to article page

Genome Medicine

ISSN: 1756-994X

Contact us