Table 2 Sequencing and mapping numbers for patient samples out of 592,785 total reads
From: Detection of DNA fusion junctions for BCR-ABL translocations by Anchored ChromPET
| Cell line | |||
|---|---|---|---|
| Patient sample 1 | Patient sample 2 | Patient sample 3 | |
| Barcoded reads | 89,316 | 258,239 | 37,538 |
| Mapped | |||
| First tag | 8,952 | 30,586 | 3,782 |
| Second tag | 8,861 | 32,275 | 3,966 |
| Percent mapped | |||
| First tag | 10.0% | 11.8% | 10.1% |
| Second tag | 9.9% | 12.5% | 10.6% |
| Mapped uniquely | |||
| First tag | 4,824 | 16,456 | 2,186 |
| Second tag | 4,828 | 17,248 | 2,232 |
| Total anchored chromPETs | 994 | 3,753 | 403 |
| Junctional chromPETs | 23 | 92 | 10 |
| Percent breakpoint | 2.3% | 2.5% | 2.5% |
