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Table 2 Sequencing and mapping numbers for patient samples out of 592,785 total reads

From: Detection of DNA fusion junctions for BCR-ABL translocations by Anchored ChromPET

 

Cell line

 

Patient sample 1

Patient sample 2

Patient sample 3

Barcoded reads

89,316

258,239

37,538

Mapped

   

   First tag

8,952

30,586

3,782

   Second tag

8,861

32,275

3,966

Percent mapped

   

   First tag

10.0%

11.8%

10.1%

   Second tag

9.9%

12.5%

10.6%

Mapped uniquely

   

   First tag

4,824

16,456

2,186

   Second tag

4,828

17,248

2,232

Total anchored chromPETs

994

3,753

403

Junctional chromPETs

23

92

10

Percent breakpoint

2.3%

2.5%

2.5%

  1. Number of chromPETs sequenced, mapped, anchored to BCR and junctional for each sample for patient samples.
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Genome Medicine

ISSN: 1756-994X

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