Sample-level enrichment analysis unravels shared stress phenotypes among multiple cancer types

Table 1 Tumor profiling data sets used in the study

Name	Tumor type(s)	Sample number	Source
Ivshina et al. 2006 [21]	Breast	289	GEO: GSE4922
Pawitan et al. 2005 [19]	Breast	159	GEO: GSE1456
Wang et al. 2005 [15]	Breast	286	GEO: GSE2034
Kim et al. 2010 [20]	Bladder	257	GEO: GSE13507
TCGA 2008 [1]	Brain	400	TCGA: glioblastoma
Tothill et al. 2008 [16]	Ovary	284	GEO: GSE9891
Crijns et al. 2009 [22]	Ovary	416	GEO: GSE13876
TCGA, 2011 [23]	Ovary	521	TCGA: ovarian serous
Bild et al. 2006 [6]	Lung	112	GEO: GSE3141
Raponi et al. 2006 [18]	Lung	131	GEO: GSE4573
Smith et al. 2010 [17]	Colon	233	GEO: GSE17538

Each dataset contains a number of patients with survival information. The 'Source' column gives the GEO accession id of the experiment.

ISSN: 1756-994X