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Table 2 List of somatic coding point mutations and small indels

From: Cancer of the ampulla of Vater: analysis of the whole genome sequence exposes a potential therapeutic vulnerability

Genomic position and allelesa

Gene ID

Codon change

Amino acid consequence

SIFT prediction

Chr1:71831141G/A

NEGR1

503C>T

T168I

Damaging

Chr1:149227247C/T

ANXA9

760C>T

R245C

Damaging

Chr1:156702726C/A

OR10K1

751C>A

H251N

Damaging

Chr1:220801358G/T

TAF1A

1211C>A

A404D

Damaging

Chr1:226621463T/G

OBSCN

19592T>G

F6531C

Not scored

Chr1:238137913G/A

CHRM3

539G>A

R180Q

Damaging

Chr2:49235000G/A

FSHR

61C>T

R21W

Tolerated

Chr2:165735207G/C

SCN3A

362C>G

A121G

Damaging

Chr2:178905886C/T

OSBPL6

529C>T

R177X

-

Chr3:109658364C/T

MYH15

2137G>A

G713R

Damaging

Chr3:129258301T/G

SEC61A1

280T>G

L94V

Damaging

Chr4:6670038G/A

MAN2B2

2732G>A

R911H

Tolerated

Chr6:28336272A/G

NKAPL

1144A>G

S382G

Damaging

Chr7:2599270C/T

IQCE

1333C>T

R445X

-

Chr7:43813258G/A

BLVRA

790G>A

G264S

Tolerated

Chr8:76091857G/T

CRISPLD1

950G>T

C317F

Damaging

Chr9:33301117G/A

NFX1

1240G>A

G414R

Damaging

Chr10:17777173T/C

STAM

364T>C

Y122H

Damaging

Chr10:99328071C/T

ANKRD2

274C>T

R92W

Damaging

Chr11:6368506-6368518del

SMPD1

102-114del

L35WfsX72

-

Chr11:92170718A/T

FAT3

4894A>T

M1632L

Not scored

Chr11:116661033A/T

RNF214

2068A>T

T690S

Not scored

Chr12:1854754C/T

CACNA2D4

1730G>A

G577E

Damaging

Chr12:5902149C/A

ANO2

93G>T

Q31H

Damaging

Chr12:25289551C/A

KRAS

35G>T

G12V

Damaging

Chr14:19598288-19598307del

OR4L1

245-264del

I82TfsX104

-

Chr15:32142462G/A

CHRM5

252G>A

M84I

Damaging

Chr15:83002258G/C

NMB

130C>G

H44D

Tolerated

Chr17:11543819G/A

DNAH9

4919G>A

R1640Q

Tolerated

Chr17:41416912C/G

MAPT

905C>G

T302R

Damaging

Chr18:42815392C/T

TCEB3B

242G>A

R81Q

Tolerated

Chr18:46845916C/T

SMAD4

1081C>T

R361C

Damaging

Chr20:25405049-25405055del

NINL

2872-2878del

W958HfsX960

-

  1. aReference allele/mutated allele.