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Table 1 Output from HLAminer HLA class I predictions from a CRC patient 100-nucleotide RNA-Seq sample

From: Derivation of HLA types from shotgun sequence datasets

Allelea Scoreb Expect value (Eval) Confidence (-10 × log10(Eval))
HLA-Ac    
   Predictiond 1 - A*02    
A*02:01P 64038.03 1.63E-06 57.9
   Prediction 2 - A*11    
A*11:01P 5463.99 5.30E-09 82.8
HLA-B    
   Prediction 1 - B*27    
B*27:05P 64579.61 2.67E-18 175.7
   Prediction 2 - B*07    
B*07:02P 56662.08 6.63E-12 111.8
HLA-C    
   Prediction 1 - C*07    
C*07:02P 49419.33 5.23E-08 72.8
   Prediction 2 - C*02    
C*02:02Pe 20466.00 6.64E-16 151.8
C*02:21e 20466.00 6.64E-16 151.8
  1. aHLA protein coding alleles validated by PCR are shown in bold face. bThe protein coding allele predictions are arranged by decreasing score from most to less likely. cMost likely HLA class I allele groups and protein coding alleles (Confidence (-10 × log10(Eval)) ≥ 20 Score ≥ 1,000) for each gene. dThe prediction rank factors in the maximum score for each predicted allele. eAmbiguity arises when two or more HLA allele group or protein coding alleles have the same score (for example, C*02:02P and C*02:21).