Figure 2

Identification of recombination breakpoints by HMM. This figure shows the HMM-based detection of recombination and the predicted fetal haplotype. A genomic region from on Chr3 (120-150 Mb) is shown with lines (red for paternal allele, blue for maternal allele) indicating the logarithmic odds ratio between transmission probability of haplotype 1 and haplotype 0, which were computed by the HMM at each site. The color-coded chart (top) shows the predicted fetal haplotype as a combination of parental alleles.