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Table 2 The general accuracy of haplotype prediction

From: Haplotype-assisted accurate non-invasive fetal whole genome recovery through maternal plasma sequencing

Category Paternal allele Maternal allele
   Autosome Autosome ChrX
Consistent with g-DNA from cord blood Loci (n, percentage) 105,729 (98.57%) 103,082 (95.37%) 1,902 (98.45%)
Inconsistent with g-DNA from cord blood Loci (n, percentage) 1,529 (1.43%) 5,005 (4.63%) 30 (1.55%)
  Type I (noisy from haplotype inference) 1,458 (95.36%) 1,442 (28.81%) -
  Type II (recombination breakpoint related) 71 (4.64%) 3,295 (65.83%) 24 (80.00%)
  Type III (centromere or chromosome edge related) 0 (0%) 268 (5.35%) 6 (20.00%)
Total 107,258 108,087 1,932