Table 2 The general accuracy of haplotype prediction
Category | Paternal allele | Maternal allele | ||
|---|---|---|---|---|
| Â | Â | Autosome | Autosome | ChrX |
Consistent with g-DNA from cord blood | Loci (n, percentage) | 105,729 (98.57%) | 103,082 (95.37%) | 1,902 (98.45%) |
Inconsistent with g-DNA from cord blood | Loci (n, percentage) | 1,529 (1.43%) | 5,005 (4.63%) | 30 (1.55%) |
| Â | Type I (noisy from haplotype inference) | 1,458 (95.36%) | 1,442 (28.81%) | - |
| Â | Type II (recombination breakpoint related) | 71 (4.64%) | 3,295 (65.83%) | 24 (80.00%) |
| Â | Type III (centromere or chromosome edge related) | 0 (0%) | 268 (5.35%) | 6 (20.00%) |
Total | 107,258 | 108,087 | 1,932 | |