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Table 3 Summary of validation results by program and combination of programs

From: A simple consensus approach improves somatic mutation prediction accuracy

Call set Specificity Sensitivity
MuTect 82.8%a 94.8%b
JointSNVMix2 78.6%a 85.2%b
SomaticSniper 74.5%a 95.6%b
Consensus of 3 programs 98.9%c 78.2%d
Consensus of 2+ programs 86.1% c 97.4% d
All variants 38.6%c 100%d
  1. Abbreviations: TP, true positive.
  2. aNumber of TPs predicted by program/all predictions by program for which validation was attempted.
  3. bNumber of TPs predicted by program/all TPs.
  4. cNumber of TPs predicted in the group/all predictions by program for which validation was attempted.
  5. dNumber of TPs predicted in the group/all TPs.