From: A simple consensus approach improves somatic mutation prediction accuracy
Feature | All TPsa | All FPsb | DNVc | Germlined |
---|---|---|---|---|
Median read depth | Â | Â | Â | Â |
 Germline | 105 | 25h | 28h | 12g |
 Tumor | 94 | 20h | 21g | 19g |
Mean non-reference allele frequency | Â | Â | Â | Â |
 Germline | 0.08% | 1.4%g | 1.27%g | 1.77%g |
 Tumor | 43.10% | 30.9%h | 27.3%h | 39.80% |
Mean percentage uniquely mapped reads | 97.10% | 85.3%f | 83.7%f | 89.30% |
Fraction of SNVs with <95% reads mapping uniquely | 8.3% (19/229) | 52.2%h (71/136) | 57.7%h (56/97) | 38.4%f (15/39) |
Fraction of predicted SNVs with >5% of reads mate-rescued | 4.4% (10/229) | 39.7%h (54/136) | 46.3%h (45/97) | 23.1%e (9/39) |
Mean percentage of reads mapped to multiple locations | 1.90% | 4.7%e | 4.40% | 5.5%f |