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Table 2 Genomic locations and other details of 31 single nucleotide variants (SNVs) detected in the genomes of isolates from the Acinetobacter baumannii pulsotype 27 outbreak in Birmingham, UK, 2011 to 2013

From: Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumanniiin Birmingham, England

SNV no. Location in reference assembly Orthologue annotation Amino acid Codon (residue in bold) Orthologue
    Original New Original New  
1 2354692 Two-component sensor kinase transcription regulator protein PmrB Pro Leu CCA CTA AB57_3172
2 1696968 Diguanylate cyclase Lys STOP AAA TAA AB57_0627
3 219628 16S rRNA methyltransferase GidB Arg Ser CGT AGT AB57_1794
4 2953356 3-oxoacyl-ACP reductase Leu Trp TTG TGG AB57_0871
5 2354857 Two-component sensor kinase transcription regulator protein PmrB Thr Ile ACT ATT AB57_3172
6 164435 Adenylate/guanylate cyclase Asp Gly GAC GGC AB57_1850
7 164513 Adenylate/guanylate cyclase Tyr Phe TAT TTT AB57_1850
8 2354642 Two-component sensor kinase transcription regulator protein PmrB Thr Pro ACC CCC AB57_3172
9 2568699 Threonine synthase Leu Leu TTA CTA AB57_0327
10 555356 Catalase/peroxidase HPI Leu Ile TTA ATA AB57_0488
11 2961444 AraC family transcriptional regulator Val Val GTC GTT AB57_1179
12 48566 LysR family transcriptional regulator Leu Ile CTC ATC AB57_1964
13 1778342 Lysine/ornithine N-monooxygenase BasC Trp STOP TGG TAG A1S_2384
14 1600195 Bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase Gly Ser GGT AGT AB57_2630
15 3658279 Non-coding Intergenic 88 bp from start of serB    
16 2448345 Plasmid replicase protein His Tyr CAC TAC ACINIS123_A0022
17 706757 Putative transport protein Ala Thr GCT ACT ABAYE2100
18 3286974 ABC transporter ATP-binding protein Gly Cys GGT TGT ABAYE2100
19 2501364 Regulatory helix-turn-helix protein, lysR family protein Val Ile GTA ATA ABBFA_001413
20 2354659 Two-component sensor kinase transcription regulator protein PmrB Arg Leu CGC CTC AB57_3172
21 2720233 Non-coding intergenic 72 bp from start of kdsD    
22 3818799 Argininosuccinate synthase Val Val GTT GTA AB57_1152
23 727482 Oxidoreductase short-chain dehydrogenase/reductase family Leu Leu CTA CTT AB57_2417
24 2153319 Diguanylate cyclase/phosphodiesterase Tyr Asn TAC AAC AB57_2291
25 2879522 Glutathionylspermidine synthase Asp Glu GAT GAG HMPREF0022_00853
26 2055876 D-ala-D-ala-carboxypeptidase, penicillin-binding protein Thr Lys ACG AAG AB57_2923
27 2698063 D-and L-methionine ABC transporter ATP-binding protein MetN Arg Trp CGG TGG AB57_1716
28 1499950 Peptidase M20D, amidohydrolase Glu Gly GAA GGA AB57_2996
29 396513 Non-coding intergenic 80 bp from start of TetR/AcrR transcriptional regulators    
30 2371782 Hypothetical protein Val Ala GTT GCT ACIN5074_3260
31 1935255 Hypothetical protein Arg His CGT CAT AB57_1009
  1. Orthologue designations are taken from the completed genome of Acinetobacter baumannii AB0057 (GenBank Accession CP001182). Coding sequences in which more than one SNV occurs are highlighted in bold.
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Genome Medicine

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