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Table 2 Performance examples of VariantDB

From: VariantDB: a flexible annotation and filtering portal for next generation sequencing data

Sample

Filters

Number of resulting variants

Number of annotations

First runa

Second runb

Exome (77 K variants)

De novo, exonic , five quality thresholds

859

31

8 s

6 s

Exome (78 K variants)

Five quality thresholds, SnpEff high/moderate impact

1,007

110

14 s

8 s

Exome (78 K variants)

Nonec

78,423

110

12 s

11 s

  1. aResults are retrieved from the database, and cached for future use. bResults are retrieved from cache. cNo filters are specified. As only the first 100 variants, ordered by genomic position, are initially presented, runtime is not significantly larger.