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Table 2 Details of the weighting models for each of the three variant classes

From: SuRFing the genomics wave: an R package for prioritising SNPs by functionality

Model

MAF

Conservation

Chromatin states

DNase HS

Position

DNase footprints

Enhancers

TFBSs

ALL

0

1

1

0

8

0

1

3

DM

12

2

6

1

15

1

0

5

DFP

0

0

3

1

15

3

5

2

  1. The first column lists the three weighting models (ALL, DM and DFP). Each subsequent column represents a different annotation class. The values represent the weightings of each annotation class defined in each weighting model.
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Genome Medicine

ISSN: 1756-994X

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