Autoimmune disease | Number of Immunochip top SNPs | 1000 genomes pilot project | HapMap 3 | SNP 500 kb | Number of genes (Gencode version 14) | Â | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
SNPs found | Proxy SNPs (r2= 1) | Average locus size (bp) | SNPs found | Average locus size (bp) | SNPs found | Locus size (bp) | Protein-coding | lncRNA | Reference | ||
CD | 29 | 29 | 338 | 123,953 | - | - | - | - | 50 | 14 | [45] |
CeD | 32 | 30 | 246 | 125,799 | - | - | 2 | 1,000,000 | 127 | 37 | [44] |
IBD (shared) | 97 | 95 | 984 | 139,174 | 2 | 172,626 | 2 | 1,000,000 | 254 | 107 | [45] |
JIA | 16 | 15 | 112 | 152,964 | - | - | 1 | 1,000,000 | 73 | 20 | [46] |
PBC | 18 | 16 | 143 | 176,717 | 1 | 859,903 | 2 | 1,000,000 | 90 | 38 | [47] |
PS | 33a | 32 | 287 | 111,617 | - | - | 1 | 1,000,000 | 131 | 48 | [48] |
PsCh | 12 | 12 | 81 | 227,273 | - | - | - | - | 50 | 17 | [49] |
RA | 26 | 23 | 132 | 96,343 | - | - | 3 | 1,000,000 | 127 | 36 | [50] |
UC | 22 | 22 | 198 | 127,674 | - | - | - | - | 48 | 24 | [45] |
Total | 285 | 274 | 2,521 | 142,390 | 3 | 516,265 | 11 | 1,000,000 | 950 | 341 | Â |