Reducing INDEL calling errors in whole genome and exome sequencing data

Table 2 Mean coefficients of variation of coverage with respects to the different regions

	Exonic targeted regions	WGS-WES intersection INDEL regions	WGS-specific INDEL regions	WES-specific INDEL regions
WGS	39.4% (1.9%)	47.2% (3.0%)	75.3% (5.7%)	56.1% (9.6%)
WES	109.3% (1.5%)	96.8% (3.2%)	281.5% (13.3%)	117.4% (22.8%)

Exonic targeted regions means the exons that the exome capture kit was designed to pull down and enrich. WGS-WES intersection INDELs means the INDELs called from both WGS and WES data. WGS-specific INDELs means the INDELs only called from the WGS data while WES-specific INDELs means the INDELs only called from the WES data. The standard deviation is shown in parenthesis.

ISSN: 1756-994X