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Table 1 Data sets used to assess accuracy of SRST2

From: SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Species Citation N (isolates) Population Sequencing centre Average read depth Read length (bp)
Staphylococcus aureus [36] 134 Clonal, ST22 Sanger, UK 24 55
Staphylococcus aureus [37] 128 Clonal, ST239 Sanger, UK 60 65
Streptococcus pneumoniae [38] 113 Clonal, ST81 Sanger, UK 30 55
Salmonella enterica Typhimurium [39] 44 Clonal, ST313 Sanger, UK 34 76
Shigella (E. coli) [40] 81 Clonal, S. sonnei Sanger, UK 25 55
Enterococcus faecium [41] 43 Diverse, dominated by ST203, ST17 Melbourne, Australia 658 101
Listeria monocytogenes This paper 231 Diverse Melbourne, Australia 36 152