SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Table 1 Data sets used to assess accuracy of SRST2

Species	Citation	N (isolates)	Population	Sequencing centre	Average read depth	Read length (bp)
Staphylococcus aureus	[36]	134	Clonal, ST22	Sanger, UK	24	55
Staphylococcus aureus	[37]	128	Clonal, ST239	Sanger, UK	60	65
Streptococcus pneumoniae	[38]	113	Clonal, ST81	Sanger, UK	30	55
Salmonella enterica Typhimurium	[39]	44	Clonal, ST313	Sanger, UK	34	76
Shigella (E. coli)	[40]	81	Clonal, S. sonnei	Sanger, UK	25	55
Enterococcus faecium	[41]	43	Diverse, dominated by ST203, ST17	Melbourne, Australia	658	101
Listeria monocytogenes	This paper	231	Diverse	Melbourne, Australia	36	152

ISSN: 1756-994X