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Table 2 Data sets used to demonstrate utility of SRST2 in the hospital setting

From: SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Species Citation N (isolates) Average read depth Read length (bp)
Enterococcus faecium (Figure 7a-c) [41] 43 658 101
Hospital outbreak investigations (Figure 8a-b) [15] 20 36 151
K. pneumoniae, E. coli [42] 69, 74 34 101