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Table 2 Data sets used to demonstrate utility of SRST2 in the hospital setting

From: SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Species

Citation

N (isolates)

Average read depth

Read length (bp)

Enterococcus faecium (Figure 7a-c)

[41]

43

658

101

Hospital outbreak investigations (Figure 8a-b)

[15]

20

36

151

K. pneumoniae, E. coli

[42]

69, 74

34

101