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Table 5 Comparison of SRST2 and MLST Typer (ref 21)

From: SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

Correct calls

N (%)

Both

14 (33%)

Neither

1 (2%)a

SRST2 only

27 (61%)

MLST Typer only

0

  1. Summary of correctly called MLST sequence types (STs) for 42?S. enterica serovar Typhimurium read sets (accessions in Table 1) with >1 mean read depth.
  2. aERR023807 had 44 read depth and was not called by MLST Typer, but six/seven alleles were correctly called by SRST2.
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Genome Medicine

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