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Comparison of SRST2 and MLST Typer (ref 21)
SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
MLST Typer only
Summary of correctly called MLST sequence types (STs) for 42?
serovar Typhimurium read sets (accessions in Table
) with >1 mean read depth.
ERR023807 had 44 read depth and was not called by MLST Typer, but six/seven alleles were correctly called by SRST2.
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