Figure 6

Presentation styles for ddRADseq data. (A,B) Allelic ratios drawn as grey lines from top and bottom edges. (A) Allelic ratios for YJB12712 derivative 2 (top, red) compared with reference SC5314 (bottom, grey). Regions that are predominantly white in both samples were homozygous in the parent strain. (B) Data from YJB12712 derivative 2 illustrated without the reference control and using the hapmap color scheme: white regions were homozygous in the reference strain, cyan is homolog ‘a’, and magenta is homolog ‘b’. (C) Two additional isolates (YJB12712 derivative 1 and YJB12712 derivative 9) from the same experiment illustrating different degrees of LOH on the left arm of Chr1. Chromosome illustrations are as in Figure 2.