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Table 2 Expressed sequence variants identified in VPS9D1

From: An integrated transcriptome and expressed variant analysis of sepsis survival and death

Chromosome (Start:Stop) Variant type Reference allele Variant allele cDNA change Protein change Variant impact Reference SNP ID Sepsis non-survivors Sepsis survivors
16 (89774899:89774899) Substitution G T c.1738C > A p.Leu580Met Non-synonymous rs182342705 0/20 0/69
16 (89775352:89775352) Substitution C T c.1610G > A p.Arg537Gln Non-synonymous   0/6 1/27
16 (89775776:89775776) Substitution T G c.1456A > C p.Thr486Pro Non-synonymous   2/26 30/74
16 (89777078:89777078) Substitution G A c.1174C > T p.Arg392Trp Non-synonymous rs56288641 0/20 2/67
16 (89777123:89777123) Substitution C T c.1129G > A p.Asp377Asn Non-synonymous rs148694296 0/23 1/68
16 (89777306:89777306) Substitution G T c.946C > A p.Pro316Thr Non-synonymous   0/25 2/76
16 (89777337:89777337) Substitution T A c.915A > T p.Arg305Ser Non-synonymous   0/15 2/67
16 (89777338:89777338) Substitution C G c.914G > C p.Arg305Thr Non-synonymous   0/16 2/66
16 (89777386:89777386) Substitution C G c.866G > C p.Arg289Thr Non-synonymous   0/23 2/74
16 (89777387:89777387) Substitution T C c.865A > G p.Arg289Gly Non-synonymous   0/23 2/74
  1. A given subject may harbor more than one variant. Multiple transcripts and corresponding proteins exist for VPS9D1. cDNA and protein changes are based on VPS9D1 transcript NM_004913.2 and protein NP_004904.2.