VERSE: a novel approach to detect virus integration in host genomes through reference genome customization

Table 3 The number of virus integration sites detected by VirusFinder, VirusSeq, and VERSE

Data type	Known integration sites	VERSE	VirusFinder ^a	VirusSeq ^b
WGS	20	16	13	-
RNA-seq	11	9	8	7
TS	3	3	2	3
Total	34	28 (82%)	23 (68%)	-

^aThe version of VirusVinder used in our experiment is release 6/19/2014. ^bThe version of VirusSeq used in our experiment is the latest release (8/9/2013). RNA-seq, whole transciptome sequencing; TS, targeted sequencing; WGS, whole genome sequencing.

ISSN: 1756-994X