Table 1 RNA-seq datasets used in this study
From: Activation of an endogenous retrovirus-associated long non-coding RNA in human adenocarcinoma
Server | Dataset ID | Description | Download host |
|---|---|---|---|
SRA | SRP010181 | Colorectal cancer tumor matched normal libraries (n = 130) | [29] |
CGhub | Various | Twenty-five different cancers and normal tissues (n = 7,677) from TCGA | [30] |
GEO | GSE40419 | Lung adenocarcinoma tumor matched normal libraries (n = 144) | [31] |
GEO | GSE30611 | Human Bodymap 2.0 representing 16 normal human tissues | [31] |
ENCODE | Various | Fastq files from 15 different cell lines, replicates downloaded where available | [32] |
SRA | SRP008280 | Triplicate control K562 cell RNA-seq | [29] |