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Table 1 Primer sequences and coordinates

From: Novel APC promoter and exon 1B deletion and allelic silencing in three mutation-negative classic familial adenomatous polyposis families

Primer name

Primer sequence

Left-most position of primer

(GRCh37/hg19 coordinates)

P1

5′ CTAGGCTATACCATCTAGGCTTGTG 3′

chr5:112,034,609

P2

5′ GAGGCCAGTATTACTTTGATACCC 3′

chr5:112,034,958

P3

5′ CTGACCAATATCCTCACATAGCTG 3′

chr5:112,045,903

P4

5′ GAGTTCCCTGGTGTAAATGCTCT 3′

chr5:112,032,220

P5

5′ CCCTAACAACCAGTCTGAGTAGC 3′

chr5:112,032,727

P6

5′ AGTAAACCTGGAAAGAGCACCAC 3′

chr5:112,032,926

P7

5′ CTTCTAGTACTTAAAGGGACAGCACC 3′

chr5:112,033,107

P8

5′ ATCCTCCATATCTGTGGGTTCTG 3′

chr5:112,034,220

P9

5′ GCTCTGCTTAACGACAGGAATAC 3′

chr5:112,034,692

P10

5′ GTAGAGGCCAGATACACTAATGTCC 3′

chr5:112,049,943

P11

5′ CTACTATGCCAGACAGTATTCCAGAC 3′

chr5:112,050,557

P12

5′ CCAGAGATCAGTAGTCTTTCCAGAG 3′

chr5:112,051,725

P13

5′ CAGAGACCTGCACTCAATAAATGG 3′

chr5:112,052,217

P14

5′ ACAGTGTCTGGCTCTCTGAGATACT 3′

chr5:112,029,655

P15

5′ CATCTATGTAGGCTAGAGAGGGAGA 3′

chr5:112,046,239

P16

5′ AGTTAGCTGCTGGAGAAGGAGTTAG 3′

chr5:112,176,294

P17

5′ GCTGGTAACTTTAGCCTCTGATTC 3′

chr5:112,176,956

P18

5′ GAATCAGAGGCTAAAGTTACCAGC 3′

chr5:112,176,956

P19

5′ GTCACTGAGAGAACTCAGAGAGGAA 3′

chr5:112,177,189