Table 2 Haplotype phasing by SNP genotyping
SNP | Reference | Distance (bp) a | 0124 | 0124 phased b | 0130 | 0130 phased b | 0163 | 0163 phased b |
|---|---|---|---|---|---|---|---|---|
SNPs 5′ to deletion | ||||||||
rs76768628 | A | 2408 | A/A | A | A/A | A | A/A | A |
rs60905866 | G | 2250 | G/G | G | G/G | G | G/G | G |
rs10463643 | C | 2150 | C/T | T | T/T | T | C/T | T |
rs10051624 | G | 1781 | G/C | G | G/G | G | G/C | G |
rs2900066 | A | 473 | A/T | T | T/T | T | A/T | T |
rs6594643 | C | 275 | C/A | C | C/C | C | C/A | C |
rs6594644 | T | 229 | T/G | T | T/T | T | T/G | T |
SNPs 3′ to deletion | ||||||||
rs4705559 | A | 4276 | A/G | A | A/A | A | A/G | A |
rs7704618 | T | 4619 | T/G | T | T/T | T | T/G | T |
rs1661035 | G | 5982 | G/C | C | C/C | C | G/C | C |
rs76028897 | A | 6151 | A/A | A | A/A | A | A/A | A |