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Fig. 1 | Genome Medicine

Fig. 1

From: Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data

Fig. 1

A workflow of the WG-FAST pipeline. Input files are shown in white boxes and include a SNP matrix, a corresponding phylogeny, a reference genome assembly, and a directory of reads from all unknowns. The output files include a phylogeny with unknowns highlighted in red, all pairwise patristic distances, the average depth of coverage across the reference assembly, and if the subsample routine is invoked, the resulting P values

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Genome Medicine

ISSN: 1756-994X

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