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Table 5 Detailed clinical information of 47 MYC-rearranged DLBCL cases

From: Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas

Sample IDa

BL probb

Treatmentc

Survival (years)/responsed

BCL2, BCL6 rearrangement

13 cases with MYC-rearrangement classified as BL by BDC

HMRN_52_v3_old

0.52

R-CHOP

Alive (4.46)

BCL2 rearranged

HMRN_30_v4_new

0.617

R-CHOP

Alive (1.9)

BCL2, BCL6 rearranged

RCH_125_v4_new

0.75

R-CHOP

Complete remission

BCL2, BCL6 rearranged

RCH_93_v4_new

0.665

R-CHOP

Persistent disease

BCL2 rearranged

HMRN_64_v4_old

0.716

R-CHOP

Died (2.14)

BCL2 rearranged

LY_43_v4_rep

0.662

R-CHOP

Died (0.45)

BCL2, BCL6 rearranged

HMRN_107_v4_old

0.745

R-CHOP

Died (0.63)

BCL2 rearranged

HMRN_34_v4_new

0.738

R-CHOP

Died (0.35)

BCL2 rearranged

HMRN_8_v4_old

0.561

R-CHOP

Died (0.95)

BCL2 rearranged

HMRN_74_v4_old

0.552

R-CHOP

Died (6.19)

BCL2 rearranged

LY_3_v4_new

0.777

CODOX-M/IVAC

Died (0.08)

BCL2 rearranged, BCL6 normal

HMRN_45_v4_rep

0.674

Unknown

Unknown

BCL2 rearranged

HMRN_56_v4_rep_2

0.711

Unknown

Unknown

BCL2, BCL6 rearranged

34 cases with MYC-rearrangement classified as DLBCL by BDC

HMRN_49_v4_new

0.029

R-CHOP

Alive (1.08)

BCL6 rearranged

HMRN_47_v4_old

0.017

R-CHOP

Alive (6.40)

BCL6 rearranged

HMRN_112_v4_old

0.07

R-CHOP

Alive (6.31)

BCL6 rearranged

HMRN_52_v4_new

0.126

R-CHOP

Alive (1.22)

BCL2 amplified

HMRN_35_v4_new

0.168

R-CHOP

Alive (1.25)

BCL2 rearranged

HMRN_37_v4_new

0.008

R-CHOP

Alive (4.59)

BCL2 rearranged

HMRN_53_v4_old

0.032

R-CHOP

Alive (4.85)

BCL2 rearranged

HMRN_55_v4_new

0.136

R-CHOP

Alive (3.9)

BCL2 rearranged

HMRN_49_v4_old

0.01

R-CHOP

Alive (6.06)

BCL2 rearranged

HMRN_132_v3_old

0.023

R-CHOP

Alive (6.86)

BCL2, BCL6 normal

LY_35_v4_rep

0.016

R-CHOP

Alive (1.55)

BCL2 normal, BCL6 rearranged

LY_40_v4_rep

0.037

R-CHOP

Alive (1.59)

BCL2 normal, BCL6 rearranged

RCH_134_v4_new

0.086

R-CHOP

Complete remission

BCL6 rearranged

RCH_133_v4_new

0.148

R-CHOP

Complete remission

BCL2 rearranged

RCH_122_v4_new

0.19

R-CHOP

Complete remission

BCL2 rearranged

RCH_76_v4_new

0.162

R-CHOP

Complete remission

BCL2, BCL6 normal

RCH_120_v4_new

0.375

R-CHOP

Complete remission

BCL2, BCL6 normal

RCH_109_v4_new

0.008

R-CHOP

Persistent disease (died)

BCL6 rearranged

LY_37_v4_rep

0.071

R-CHOP

Died (0.95)

BCL2 rearranged, BCL6 normal

LY_17_v4_rep

0.15

R-CHOP

Died (1.04)

BCL2, BCL6 normal

HMRN_46_v4_rep

0.245

R-CHOP

Died (0.49)

BCL2 rearranged

HMRN_104_v3_old

0.009

R-CHOP

Died (0.39)

BCL2, BCL6 normal

HMRN_76_v4_old

0.195

R-CHOP

Died (0.66)

BCL2, BCL6 normal

HMRN_42_v4_new

0.088

R-CHOP

Died (1.81)

BCL2, BCL6 normal

HMRN_129_v4_old

0.02

R-CHOP

Died (0.37)

BCL2, BCL6 normal

LY_21_v4_rep

0.5

CODOX-M/IVAC

Died (0.14)

BCL2 rearranged, BCL6 normal

HMRN_172_v4_old

0.034

No active treatment

Died (0.02)

BCL2 rearranged

HMRN_48_v4_rep

0.015

No active treatment

Died (1.8)

BCL2 rearranged

HMRN_5_v3_old

0.082

No active treatment

Died (0.18)

BCL6 rearranged, BCL2 amplified

HMRN_23_v4_new

0.015

No active treatment

Died (0.09)

BCL2, BCL6 normal

HMRN_44_v4_rep

0.313

Died before treatment

Died (0.04)

BCL2 rearranged

HMRN_54_v4_rep

0.216

Died before treatment

Died (0.03)

BCL2 rearranged

HMRN_70_v4_rep

0.111

R-CHOP

Unknown

BCL6 rearranged

HMRN_18_v4_new

0.093

Unknown

Unknown

BCL2, BCL6 rearranged

  1. aSamples are collected from two clinical trails as well as local cases in the Haematological Malignancy Diagnostic Service (HMDS; St James Hospital, Leeds). Sample IDs starting with RCH are records from R-CHOP-treated trials and those starting with LY [28] are records from a dose-modified CODOX-M/IVAC trial. The rest of the samples starting with HMRN are local patients from the HMDS database. Samples labelled with the _old suffix are cases submitted to the Gene Expression Omnibus (GEO) in previous studies, and those labeled with the _new suffix are cases not in the GEO database yet
  2. bBL prob is the Burkitt lymphoma probability generated by BDC (Burkitt lymphoma and diffuse large B cell lymphoma classifier developed in our work)
  3. cR-CHOP is usually used to treat DLBCL; CODOX-M/IVAC is a treatment usually for BL or BL-like patients
  4. dIn R-CHOP trials, all patients are evaluated with treatment response and this is used in the study