From: Inferring pathway dysregulation in cancers from multiple types of omic data
C1 cannonical gene sets (MSigDB) | GSOA | GSEA | GAGE | GSAA | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Rank | P | FDR | Rank | P | FDR | Rank | P | FDR | Rank | P | FDR |
chrY | 1 | 0.001 | 0.079 | 1 | 0.000 | 0.000 | 1 | 0.001 | 0.297 | 1 | 0.000 | 0.105 |
chrYq11 | 1 | 0.001 | 0.079 | 1 | 0.000 | 0.000 | 2 | 0.002 | 0.335 | 1 | 0.000 | 0.105 |
chrYp11 | 1 | 0.001 | 0.079 | 1 | 0.000 | 0.002 | 6 | 0.052 | 0.923 | 1 | 0.000 | 0.210 |
chrXq26 | 17 | 0.035 | 0.623 | 114 | 0.652 | 0.961 | 316 | 0.979 | 0.979 | 284 | 0.892 | 0.959 |
chrXp22 | 156 | 0.505 | 0.985 | 4 | 0.002 | 1.000 | 3 | 0.008 | 0.895 | 1 | 0.000 | 1 |
# of sig. gene sets | 29 | 7 | 6 | 21 | ||||||||
C2 cannonical gene sets (MsigDB) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
X-inactivation genes | 17 | 0.031 | 0.770 | 1 | 0.000 | 0.000 | 2 | 0.008 | 0.914 | 1 | 0.000 | 0.135 |
Testis genes | 71 | 0.127 | 0.885 | 1 | 0.000 | 0.067 | 3 | 0.008 | 0.914 | 1 | 0.000 | 0.890 |
GNF female genes | 499 | 0.943 | 0.982 | 3 | 0.010 | 0.067 | 1 | 0.005 | 0.914 | 1 | 0.000 | 0.520 |
# of sig. gene sets | 34 | 8 | 7 | 23 |