Table 1 Criteria checklist for enhanced transparency and reproducibility in clinical omics

▪ Exact input data used for the analysis

▪ Key intermediate data generated from the analysis

▪ Third party data (i.e., data from external sources)

▪ Output data

▪ Provenance of all data used

▪ All code/software used in the analysis

▪ Provenance of all code used

▪ Documentation of computing environment used

▪ Veracity checks to ensure analytical validity

▪ High-level flow diagram describing the analysis