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Fig. 6 | Genome Medicine

Fig. 6

From: The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations

Fig. 6

Query and results pages – gene, miR, or protein in a specific cancer type and one clinical parameter. a An input query window shows the selections of PIK3CA (gene), STAD (cancer type), and EBV present (clinical parameter). Results of genomic profile tabs are shown for (b) copy number variation of PIK3CA between EBV-infected and EBV-uninfected samples and (c) mutation frequency between EBV-infected and EBV-uninfected samples. Genomic profile tabs vary depending on search parameters. Tables to the right of the genomic profile graphs display percentiles for each clinical parameter and genomic value category. This example shows the frequency of PIK3CA mutations: 16.4 % of the EBV-negative samples have mutations compared to 83.3 % of EBV-positive samples

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Genome Medicine

ISSN: 1756-994X

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