Skip to main content

Table 2 GeneNetwork results over all cis-eQTLs

From: An integrative systems genetics approach reveals potential causal genes and pathways related to obesity

 

Pathway or process

P-value

GO: BP

co-factor biosynthetic process

1 × 10−18

 

co-factor metabolic process

6 × 10−18

 

water-soluble vitamin metabolic process

3 × 10−17

GO: CC

mitochondrial matrix

5 × 10−13

 

organelle outer membrane

1 × 10−12

 

outer membrane

2 × 10−12

GO: MF

transferase activity, transferring alkyl or aryl (other than methyl) groups

2 × 10−17

 

co-enzyme binding

3 × 10−14

 

co-factor binding

3 × 10−13

KEGG

amino sugar and nucleotide sugar metabolism

1 × 10−12

 

pyrimidine metabolism

4 × 10−10

 

glutathione metabolism

4 × 10−9

Reactome

metabolism of water-soluble vitamins and co-factors

3 × 10−16

 

metabolism of vitamins and co-factors

3 × 10−16

 

mitochondrial tRNA amino-acylation

6 × 10−16

MGI

abnormal inhibitory postsynaptic currents

3 × 10−11

 

abnormal cell morphology

7 × 10−11

 

abnormal circulating amino acid level

9 × 10−10

Tissues and cells

adipocytes

1 × 10−48

choroid

3 × 10−48

aortic valve

8 × 10−47

subcutaneous fat

10 × 10−46

subcutaneous fat, abdominal

2 × 10−45

  1. Abbreviations: GO Gene Ontology, BP Biological Process, CC Cellular Component, MF Molecular Function, KEGG Kyoto Encyclopedia of Genes and Genomes, MGI Mouse Genome Informatics