|
Sequencing run
|
Raw reads
|
Filtered reads
|
Read length
|
Library prep
|
|
MP1a
|
3845734
|
N/A
|
2 × 80 bp
|
Nextera Mate-Pair
|
|
MP2a
|
31223454
|
12095792
|
2 × 80 bp
|
Nextera Mate-Pair
|
|
MP3a
|
14121900
|
4397510
|
2 × 250 bp
|
Nextera Mate-Pair
|
|
PE1b
|
213604902
|
29314946
|
2 × 250 bp
|
Nextera XT
|
|
Genome Assemblyc
|
Contigs
|
N50 (bp)
|
Assembly Size
| |
|
Mitochondria
|
1
|
41,656
|
41,656
| |
|
Contigs
|
31,194
|
3,411
|
48,938,887
| |
|
Scaffolds
|
26,811
|
19,415
|
49,120,517
| |
|
Gap-fill
|
26,811
|
19,012
|
48,939,625
| |
|
Final assembly (minus <500 bp, contaminants)
|
14,699
|
26,144
|
44,270,879
| |
-
aThree runs of a Nextera mate-pair library of Balamuthia strain 2046 from axenic culture sequenced on an Illumina MiSeq
-
bNextera XT paired-end library of strain 2046 sequenced on an Illumina HiSeq
-
cAssembly of mitochondrial genome from MP1 library, of whole-genome from all four libraries
