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Table 1 External data processed and integrated into the cell line portal

From: TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression

Data type Source Number cell lines Reference
Cancer cell line RNA-Seq data (2 × 101 bp) CCLE 781 [4], https://cghub.ucsc.edu/datasets/ccle.html
Cancer cell line RNA-Seq data (2 × 75 bp) Klijn et al. 301 [5], https://www.ebi.ac.uk/ega/datasets/EGAD00001000725
Mutations CCLE 781 [4]
Mutations Klijn et al. 675 [5], Supplementary data 3
HLA Class I and Class II types Adams et al. 49 [16]
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