Table 2 Characteristics of curated ovarian cancer datasets
From: CoINcIDE: A framework for discovery of patient subtypes across multiple datasets
| Dataset | ID | Batch ID | GEO platform ID | Commercial platform name | Samples (n) | Genes (n) |
|---|---|---|---|---|---|---|
| 1 | E.MTAB.386 | GPL6104 | Illumina HumanRef-8 V2 | 129 | 10,560 | |
| 2 | GSE12470 | GPL887 | Agilent G4110b | 53 | 18,940 | |
| 3 | GSE13876 | GPL15718 | Operon Human v3 | 157 | 20,822 | |
| 4 | GSE14764 | GPL96 | Affy U133a | 80 | 13,769 | |
| 5 | GSE17260 | GPL6480 | Agilent G4112f | 110 | 20,867 | |
| 6 | GSE18520 | GPL570 | Affy U133 Plus 2.0 | 63 | 20,440 | |
| 7 | GSE19829 | GPL570 | GPL570 | Affy U133 Plus 2.0 | 28 | 20,440 |
| 8 | GSE19829 | GPL8300 | GPL8300 | Affy U95 v2 | 42 | 9,674 |
| 9 | GSE20565 | GPL570 | Affy U133 Plus 2.0 | 140 | 20,440 | |
| 10 | GSE2109 | GPL570 | Affy U133 Plus 2.0 | 204 | 20,440 | |
| 11 | GSE26193 | GPL570 | Affy U133 Plus 2.0 | 107 | 20,440 | |
| 12 | GSE26712 | GPL96 | Affy U133a | 195 | 13,769 | |
| 13 | GSE30161 | GPL570 | Affy U133 Plus 2.0 | 58 | 20,440 | |
| 14 | GSE32062 | GPL6480 | Agilent G4112f | 260 | 20,867 | |
| 15 | GSE32063 | GPL6480 | Agilent G4112f | 40 | 20,867 | |
| 16 | GSE44104 | GPL570 | Affy U133 Plus 2.0 | 60 | 20,440 | |
| 17 | GSE49997 | GPL2986 | ABI Human Genome Survey V2 | 204 | 16,048 | |
| 18 | GSE6008 | GPL96 | Affy U133a | 172 | 8,744 | |
| 19 | GSE6822 | GPL80 | Affy Hu6800 | 66 | 5,251 | |
| 20 | GSE9891 | GPL570 | Affy U133 Plus 2.0 | 285 | 20,440 | |
| 21 | PMID15897565 | GPL96 | Affy U133a | 63 | 13,769 | |
| 22 | PMID17290060 | GPL96 | Affy U133a | 117 | 13,769 | |
| 23 | PMID19318476 | GPL96 | Affy U133a | 42 | 13,769 | |
| 24 | TCGA | GPL3291 | Affy HT U133a | 578 | 13,769 |