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Table 2 Characteristics of curated ovarian cancer datasets

From: CoINcIDE: A framework for discovery of patient subtypes across multiple datasets

Dataset ID Batch ID GEO platform ID Commercial platform name Samples (n) Genes (n)
1 E.MTAB.386   GPL6104 Illumina HumanRef-8 V2 129 10,560
2 GSE12470   GPL887 Agilent G4110b 53 18,940
3 GSE13876   GPL15718 Operon Human v3 157 20,822
4 GSE14764   GPL96 Affy U133a 80 13,769
5 GSE17260   GPL6480 Agilent G4112f 110 20,867
6 GSE18520   GPL570 Affy U133 Plus 2.0 63 20,440
7 GSE19829 GPL570 GPL570 Affy U133 Plus 2.0 28 20,440
8 GSE19829 GPL8300 GPL8300 Affy U95 v2 42 9,674
9 GSE20565   GPL570 Affy U133 Plus 2.0 140 20,440
10 GSE2109   GPL570 Affy U133 Plus 2.0 204 20,440
11 GSE26193   GPL570 Affy U133 Plus 2.0 107 20,440
12 GSE26712   GPL96 Affy U133a 195 13,769
13 GSE30161   GPL570 Affy U133 Plus 2.0 58 20,440
14 GSE32062   GPL6480 Agilent G4112f 260 20,867
15 GSE32063   GPL6480 Agilent G4112f 40 20,867
16 GSE44104   GPL570 Affy U133 Plus 2.0 60 20,440
17 GSE49997   GPL2986 ABI Human Genome Survey V2 204 16,048
18 GSE6008   GPL96 Affy U133a 172 8,744
19 GSE6822   GPL80 Affy Hu6800 66 5,251
20 GSE9891   GPL570 Affy U133 Plus 2.0 285 20,440
21 PMID15897565   GPL96 Affy U133a 63 13,769
22 PMID17290060   GPL96 Affy U133a 117 13,769
23 PMID19318476   GPL96 Affy U133a 42 13,769
24 TCGA   GPL3291 Affy HT U133a 578 13,769
  1. Datasets were collected from several repositories, including GEO. GSE = GEO series ID prefix; this prefix is only included for datasets taken directly from GEO