Skip to main content

Table 1 List of pancreatic ductal adenocarcinoma omics datasets used in multidimensional analysis

From: Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis

  Dataset Platform Samples Reference
accession ID   Normal Pancreatic cancer (PMID)
mRNA GSE15471 Affymetrix Human Genome U133 Plus 2.0 36 36 19260470
GSE28735 Affymetrix Human Gene 1.0 ST 45 45 22363658
GSE41368 Affymetrix Human Gene 1.0 ST 6 6 24120476
GSE43797 Illumina HumanHT-12 V4.0 expression bead chip 5 6 24072181
miRNA GSE24279 Febit human miRBase v11 22 136 NA
GSE29352 Febit Homo sapiens miRBase 13.0 plus 20 14 NA
GSE41369 NanoString nCounter Human miRNA assay (v1) 9 9 24120476
GSE43796 Agilent-031181 Unrestricted_Human_miRNA_V16.0_Microarray 5 6 24072181
Epigenome GSE49149 Illumina HumanMethylation450 Bead Chip 29 167 24500968
PAAD (TCGA) Illumina Infinium Human DNA Methylation 450 6 6 NA
Survival GSE21501 Agilent-014850 Whole Human Genome Microarray   132 20644708
  GSE32676 Affymetrix Human Genome U133 Plus 2.0 Array 25 7 22261810
  1. NA not available, PMID PubMed ID