Method | Description | Different ways to deal with missing data | Scalability (see Additional file 3: Figure S2) | ||
---|---|---|---|---|---|
---1 | Inter--- | Imp--- | |||
GLasso | Standard graphical lasso [54] | GLasso1 | X | ImpGLasso | No |
UGL | Unknown group L 1 regularization [62] | UGL1 | X | ImpUGL | No |
SLFA | Structured latent factor analysis [22] | SLFA1 | InterSLFA | ImpSLFA | No |
WGCNA | Weighted gene co-expression network analysis [8] | WGCNA1 | InterWGCNA | ImpWGCNA | Yes |
MGL | Module graphical lasso [11] | MGL1 | InterMGL | ImpMGL | Yes |