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Table 1 Number of samples analyzed for each tumor type and stage

From: The prognostic potential of alternative transcript isoforms across human tumors

  

T

N

M

S

Tumor type

Acronym

Early

Late

Early

Late

Early

Late

Early

Late

Breast invasive carcinoma

BRCA

256 (T1)

147 (T3, T4)

455 (N0)

171 (N2, N3)

836 (M0)

15 (M1)

164 (S1)

15 (S4)

Colon adenocarcinoma

COAD

45 (T1, T2)

31 (T4)

149 (N0)

39 (N2)

179 (M0)

33 (M1)

40 (S1)

34 (S4)

Head and neck squamous cell carcinoma

HNSC

35 (T1)

110 (T4)

166 (N0)

166 (N2, N3)

  

77 (S1, S2)

169 (S4)

Kidney chromophobe

KICH

20 (T1)

19 (T3, T4)

    

20 (S1)

19 (S3, S4)

Kidney renal clear cell carcinoma

KIRC

245 (T1)

186 (T3, T4)

233 (N0)

16 (N1)

419 (M0)

77 (M1)

240 (S1)

78 (S4)

Kidney renal papillary carcinoma

KIRP

71 (T1)

38 (T3, T4)

23 (N0)

16 (N1, N2)

  

66 (S1)

38 (S3, S4)

Lung squamous cell carcinoma

LUSC

93 (T1)

59 (T3, T4)

242 (N0)

37 (N2, N3)

  

195 (S1)

76 (S3, S4)

Lung adenocarcinoma

LUAD

137 (T1)

57 (T3, T4)

281 (N0)

70 (N2, N3)

307 (M0)

22 (M1)

99 (S1)

242 (S3, S4)

Ovarian serous cystadenocarcinoma

OV

      

18 (S2)

243 (S4)

Prostate adenocarcinoma

PRAD

69 (T2)

93 (T3, T4)

129 (N0)

14 (N1)

    

Skin cutaneous melanoma

SKCM

    

68 (M0)

17 (M1)

  

Thyroid carcinoma

THCA

137 (T1)

179 (T3, T4)

220 (N0)

211 (N1)

  

270 (S1)

48 (S4)

  1. The number of samples used for the comparison early versus late are indicated for each annotation T, N, M, S. Stages I, II, III, and IV are indicated as S1, S2, S3, and S4, respectively. Comparisons were performed between the earliest and latest available stage groups, with some exceptions for which adjacent stages were added to have enough samples for comparison. Empty cells correspond to cases not tested due to lack of sufficient samples or complete lack of annotation in the samples