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Table 2 List of genes identified by VARPRISM, fitDNM, Poisson-all, and Poisson-LGD in the SSC dataset

From: VARPRISM: incorporating variant prioritization in tests of de novo mutation association

  FDR 0.1 FDR 0.3
VARPRISM CHD8, DYRK1A, SCN2A, GRIN2B, POGZ, SUV420H1, KDM5B, TBR1, KATNAL2, MYH10, TCF7L2, TBL1XR1, DSCAM, KDM6B, OR10Z1, CHD2, WAC, PDCD1, MFRP CHD8, DYRK1A, SCN2A, GRIN2B, POGZ, SUV420H1, KDM5B, TBR1, KATNAL2, MYH10, TCF7L2, TBL1XR1, DSCAM, KDM6B, OR10Z1, CHD2, WAC, PDCD1, MFRP, SLC6A8, FOXP1, ANK2, PPP2R5D, ZC3H4, ARID1B, KCND3, ADNP, KRTAP4-4, ZNF555, PTEN, CTCF, USP45, MYO1E, DNMT3A, DIP2A, GLRA2, SYNGAP1, NCKAP1, MPP6, NR3C2, ELAVL3, PLEKHA8, PTK7, TSPAN4, TERF2, GIGYF1, PHF2, MLL5, TSR2, S100G, AKR1C2, SLC6A1, MED13L, BST2, C2orf42, GLI4, DLX3, NUDT4, CTNNB1, RIPPLY1, NTNG1, DCAF4L2, PAFAH1B2, TUBGCP4
fitDNM SCN2A, PTEN, SUV420H1, KDM5B SCN2A, PTEN, SUV420H1, KDM5B, SLC6A1, PTK7, PRB4
Poisson-all CHD8, SCN2A, DYRK1A, PTEN CHD8, SCN2A, DYRK1A, PTEN, POGZ
Poisson-LGD CHD8, DYRK1A, GRIN2B CHD8, DYRK1A, GRIN2B, CHD2, DSCAM, KATNAL2, TCF7L2, WAC, ANK2, FOXP1