Table 2 List of genes identified by VARPRISM, fitDNM, Poisson-all, and Poisson-LGD in the SSC dataset
From: VARPRISM: incorporating variant prioritization in tests of de novo mutation association
| Â | FDR 0.1 | FDR 0.3 |
|---|---|---|
VARPRISM | CHD8, DYRK1A, SCN2A, GRIN2B, POGZ, SUV420H1, KDM5B, TBR1, KATNAL2, MYH10, TCF7L2, TBL1XR1, DSCAM, KDM6B, OR10Z1, CHD2, WAC, PDCD1, MFRP | CHD8, DYRK1A, SCN2A, GRIN2B, POGZ, SUV420H1, KDM5B, TBR1, KATNAL2, MYH10, TCF7L2, TBL1XR1, DSCAM, KDM6B, OR10Z1, CHD2, WAC, PDCD1, MFRP, SLC6A8, FOXP1, ANK2, PPP2R5D, ZC3H4, ARID1B, KCND3, ADNP, KRTAP4-4, ZNF555, PTEN, CTCF, USP45, MYO1E, DNMT3A, DIP2A, GLRA2, SYNGAP1, NCKAP1, MPP6, NR3C2, ELAVL3, PLEKHA8, PTK7, TSPAN4, TERF2, GIGYF1, PHF2, MLL5, TSR2, S100G, AKR1C2, SLC6A1, MED13L, BST2, C2orf42, GLI4, DLX3, NUDT4, CTNNB1, RIPPLY1, NTNG1, DCAF4L2, PAFAH1B2, TUBGCP4 |
fitDNM | SCN2A, PTEN, SUV420H1, KDM5B | SCN2A, PTEN, SUV420H1, KDM5B, SLC6A1, PTK7, PRB4 |
Poisson-all | CHD8, SCN2A, DYRK1A, PTEN | CHD8, SCN2A, DYRK1A, PTEN, POGZ |
Poisson-LGD | CHD8, DYRK1A, GRIN2B | CHD8, DYRK1A, GRIN2B, CHD2, DSCAM, KATNAL2, TCF7L2, WAC, ANK2, FOXP1 |