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Table 2 Concordance in CN profiles between samples, expressed as percentage of sites in the genome called diploid, gain, or loss in both the LC WGS and MIP arrays for each breast tumor sample, and the percentage of sites called as gain or loss in the LC WGS or MIP results only, respectively. Concordance in only CNV regions in both LC WGS and MIP arrays, expressed as percentage, for each breast tumor sample

From: Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue

Sample

Shared sites (%)

WGS only sites (%)

CNA WGS only (Mbp)

MIP only sites (%)

CNA MIP only (Mbp)

Shared CNV (%)

LPS1

80.0

10.1

263

9.9

260

68

LPS2

83.4

7.7

202

8.8

231

74

LPS3

83.0

9.6

198

7.4

136

72

LPS4

93.1

6.6

173

0.34

8.9

49