| | | | |
LA
|
LV
|
|---|
|
SNP
|
Gene
|
Chr
|
Location
|
Samples
|
REF/ALT + REF
|
FDR-adj. p value
|
Samples
|
REF/ALT + REF
|
FDR-adj. p value
|
|---|
|
rs3810232
|
RPS9
|
19
|
54,704,760
|
35
|
0.05
|
<10-300
|
76
|
0.03
|
4 × 10–104
|
|
rs1046138
|
PKP2
|
12
|
32,944,162
|
32
|
0.84
|
1 × 10–253
|
64
|
0.92
|
8 × 10–194
|
|
rs422733
|
COL4A2
|
13
|
111,164,614
|
33
|
0.92
|
2 × 10–291
|
74
|
0.92
|
1 × 10–84
|
|
rs202118461
|
LYRM5
|
12
|
25,357,576
|
32
|
0.86
|
<10–300
|
60
|
0.95
|
9 × 10–76
|
|
rs1060391
|
YWHAB
|
20
|
43,536,807
|
28
|
0.80
|
8 × 10–164
|
64
|
0.90
|
1 × 10–99
|
|
rs2075846
|
OXA1L
|
14
|
23,239,512
|
33
|
0.91
|
2 × 10–90
|
66
|
0.92
|
5 × 10–178
|
|
rs1042917
|
COL6A2
|
21
|
47,545,768
|
31
|
0.75
|
2 × 10–161
|
78
|
0.73
|
2 × 10–72
|
|
rs7988661
|
LMO7
|
13
|
76,427,347
|
11
|
0.72
|
1 × 10–72
|
30
|
0.74
|
2 × 10–70
|
|
rs7772210
|
MTCH1
|
6
|
36,936,771
|
29
|
0.92
|
9 × 10–44
|
58
|
0.91
|
1 × 10–209
|
|
rs7988661
|
LMO7
|
13
|
76,427,347
|
11
|
0.72
|
1 × 10–72
|
30
|
0.74
|
2 × 10–70
|
- The table shows ten of the SNPs with significant ASE in both LA and LV, sorted by the sum of ranked p values for ASE calling for both LA and LV. Shown is the SNP rsID, the gene it is located within, the genomic location, number of heterozygous samples for both LA and LV available for ASE calling, the REF/ALT + REF ratio, and the FDR-adjusted p value for ASE for LA and LV tissues
