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Table 3 SNPs with allele-specific expression in both LA and LV

From: Allele-specific expression in the human heart and its application to postoperative atrial fibrillation and myocardial ischemia

Ā Ā Ā Ā 

LA

LV

SNP

Gene

Chr

Location

Samples

REF/ALTā€‰+ā€‰REF

FDR-adj. p value

Samples

REF/ALTā€‰+ā€‰REF

FDR-adj. p value

rs3810232

RPS9

19

54,704,760

35

0.05

<10-300

76

0.03

4ā€‰Ć—ā€‰10ā€“104

rs1046138

PKP2

12

32,944,162

32

0.84

1ā€‰Ć—ā€‰10ā€“253

64

0.92

8ā€‰Ć—ā€‰10ā€“194

rs422733

COL4A2

13

111,164,614

33

0.92

2ā€‰Ć—ā€‰10ā€“291

74

0.92

1ā€‰Ć—ā€‰10ā€“84

rs202118461

LYRM5

12

25,357,576

32

0.86

<10ā€“300

60

0.95

9ā€‰Ć—ā€‰10ā€“76

rs1060391

YWHAB

20

43,536,807

28

0.80

8ā€‰Ć—ā€‰10ā€“164

64

0.90

1ā€‰Ć—ā€‰10ā€“99

rs2075846

OXA1L

14

23,239,512

33

0.91

2ā€‰Ć—ā€‰10ā€“90

66

0.92

5ā€‰Ć—ā€‰10ā€“178

rs1042917

COL6A2

21

47,545,768

31

0.75

2ā€‰Ć—ā€‰10ā€“161

78

0.73

2ā€‰Ć—ā€‰10ā€“72

rs7988661

LMO7

13

76,427,347

11

0.72

1ā€‰Ć—ā€‰10ā€“72

30

0.74

2ā€‰Ć—ā€‰10ā€“70

rs7772210

MTCH1

6

36,936,771

29

0.92

9ā€‰Ć—ā€‰10ā€“44

58

0.91

1ā€‰Ć—ā€‰10ā€“209

rs7988661

LMO7

13

76,427,347

11

0.72

1ā€‰Ć—ā€‰10ā€“72

30

0.74

2ā€‰Ć—ā€‰10ā€“70

  1. The table shows ten of the SNPs with significant ASE in both LA and LV, sorted by the sum of ranked p values for ASE calling for both LA and LV. Shown is the SNP rsID, the gene it is located within, the genomic location, number of heterozygous samples for both LA and LV available for ASE calling, the REF/ALTā€‰+ā€‰REF ratio, and the FDR-adjusted p value for ASE for LA and LV tissues