From: Non-coding single nucleotide variants affecting estrogen receptor binding and activity
RegSNV ID | Location | Target gene | No. of tumors with SNV genotype (n = 501) | log2 fold change | Adjusted p value |
---|---|---|---|---|---|
rs36208869 | Promoter | GSTM1 | 32 | 4.58 | 1.25E-08 |
rs1131017 | Promoter | RPS26 | 318 | –0.39 | 5.19E-07 |
rs7113753 | Promoter | TRAPPC4 | 180 | 0.26 | 2.79E-05 |
rs1412825 | Promoter | LRRIQ3 | 243 | –0.22 | 3.64E-05 |
rs34282253 | Promoter | XKR9 | 119 | 0.41 | 4.62E-05 |
rs10747783 | Promoter | TSFM | 205 | –0.22 | 0.000157917 |
rs252923 | Promoter | SETD9 | 197 | 0.41 | 0.000157917 |
rs41293275 | Promoter | NSUN4 | 175 | –0.22 | 0.000241865 |
rs3213745 | Promoter | CEBPZ | 241 | –0.19 | 0.000444457 |
rs2732649 | intergenic | LRRC37A | 132 | 0.12 | 0.002214471 |
rs17361749 | Promoter | NSUN4 | 168 | –0.2 | 0.002736821 |
rs10489769 | Promoter | NSUN4 | 172 | –0.19 | 0.004515197 |
rs10956142 | intergenic | ANXA13 | 38 | –0.29 | 0.004515197 |
rs2939587 | Promoter | TM2D3 | 260 | 0.21 | 0.005471564 |
rs1291363 | Promoter | HTR7P1 | 315 | 0.59 | 0.006560413 |
rs4418583 | Intron | LDLRAP1 | 248 | 0.24 | 0.006560413 |
rs3811254 | Intron | OR4E2 | 3 | 0.04 | 0.009385423 |