Fig. 6

Functional genomic annotation analysis of GWAS SNPs by genomic location for three immunological disease categories. a Using the FANTOM cell type-specific expressed enhancer data, b using ENCODE ChIP-seq transcription factor binding site (TFBS) data, c using ENCODE histone mark data, and (d) using ENCODE genome segment information. Panels b–d use genetic and epigenetic data generated in the GM12878 lymphoblastoid cell line