Table 1 A summary of XGR characteristics for tasks achieved and runtime required

 xEnricher

A template for enrichment analysis

~40

 xEnricherGenes

Gene-based enrichment analysis using a wide variety of ontologies^b

~40

 xEnricherSNPs

SNP-based enrichment analysis using Experimental Factor Ontology on GWAS traits

~70

 xEnricherYours

Custom-based enrichment analysis using user-defined ontologies

~5

 xEnrichConciser

Removing redundant ones from enrichment outputs

~15

 xEnrichBarplot

Barplot of enrichment outputs

<1

 xEnrichCompare

Side-by-side barplots of comparative enrichment outputs

<1

 xEnrichDAGplot

DAG plot of enrichment outputs

<1

 xEnrichDAGplotAdv

DAG plot of comparative enrichment outputs

<1

 xGRviaGeneAnno

Annotation analysis using nearby gene annotations by a wide variety of ontologies^b

~60

 xGRviaGenomicAnno

Annotation analysis using a wide variety of genomic annotations^c

~30

 xSocialiser

A template for similarity analysis

~60

 xSocialiserGenes

Gene-based similarity analysis using structured ontologies on functions, diseases, and phenotypes

~70

 xSocialiserSNPs

SNP-based similarity analysis using Experimental Factor Ontology on GWAS traits

~60

 xCircos

Circos plot of similarity outputs

~10

 xSocialiserDAGplot

DAG plot of one set of terms used for similarity analysis

<1

 xSocialiserDAGplotAdv

DAG plot of two sets of terms used for similarity analysis

<1

 xSubneterGenes

Gene-based network analysis

~60

 xSubneterSNPs

SNP-based network analysis

~60

 xVisNet

Network visualisation

<1