Table 2 Comparison to other commonly used tools
| Â | Enrichment analysis | Annotation analysis | Similarity analysis | Network analysis | Availability | Prioritisation | Communication | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Support multiple ontologies | Respect ontology structure | Via gene annotation | Via genomic annotations | Between genes | Between SNPs | Gene-based | SNP-based | Package | Web-app | Gene-level prioritisation | Mailing list/FAQ platform | |
XGR | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | Yes | - | - |
DAVID | Yes | No | - | - | - | - | - | - | No | Yes | - | Yes |
GREAT | Yes | No | Yes | No | - | - | - | - | No | Yes | - | Yes |
DEPICT | Yes | No | Yes | Yes | - | - | - | - | Yes | No | Yes | Yes |
GOSemSim | - | - | - | - | Yes | No | - | - | Yes | No | - | - |
GRAIL | - | - | - | - | - | - | No | Yes | No | Yes | Yes | - |
dnet | Yes | Yes | - | - | - | - | Yes | No | Yes | No | - | - |
jActiveModule | - | - | - | - | - | - | Yes | No | Yes | No | - | Yes |