Fig. 5

IBD maps within polygenomic infections and between monogenomic infections. Each subplot represents an individual polygenomic infection. a = SenT009.11, b = SenT100.11, c = SenT044.12, d = SenT210.12, e = SenT232.13, f = SenT232.13. Orange/gray color scheme represents the IBD map of the polygenomic infection, with orange representing regions of the genome that are IBD and gray representing regions of the genome not IBD. Blue/green color schemes represent regions of the genome that are IBD between the strains found within the polygenomic infections and a related monogenomic strain. Blue bars indicate that region of the genome is IBD with one of the monogenomic strains, while green bars indicate that region of the genome is IBD with the other monogenomic strain. Values in parentheses indicate the proportion of the within-polygenomic infection IBD block that is explained by a particular monogenomic infection